PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000508.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 289aa    MW: 31564 Da    PI: 5.9071
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000508.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00096262285123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              + C+ C+++F +   L +H +  H
  Itr_sc000508.1_g00003.1 262 HACKSCNRTFGSEGALDSHTKAkH 285
                              67*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.053262289IPR007087Zinc finger, C2H2
PROSITE patternPS000280264285IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEFWGVEVKS GEPFSVKPGD GMVLHLSQAN LGEVKKLHGS ESVCLFVNVD GRKLVLGTLI  60
SDKLPQQQFD LIFDKDFELS HNWKNGNVYF YGFKAQNPIA EYPLSSFAFY SDEDSPLTFK  120
EPEADVKPEK QAGPEKSDVA KSSASDKKVK ITEPHKDVKA EEDESSDEDM VSSDEDMDSS  180
DGEDEDESDE TPKKVESGKK RLAESSKKTP ASDKNKKAKL ETPQKTGGKK SSVHVATPYP  240
VKQAKTAANK PNQSTPKSAG SHACKSCNRT FGSEGALDSH TKAKHSSGK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154781.11e-161PREDICTED: histone deacetylase HDT1-like isoform X3
SwissprotQ6V9I62e-91HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A2G9G0301e-100A0A2G9G030_9LAMI; Histone deacetylase
STRINGPGSC0003DMT4000216444e-99(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.29e-33histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]