PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000508.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 194aa    MW: 21225.3 Da    PI: 6.1629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000508.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-191666255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                              ykGVr++k++g+Wv+eIr+p     r   r++lg+f t+e+Aa a++ a+++l+g
  Itr_sc000508.1_g00014.1 16 VYKGVRRRKSSGKWVSEIREP-----RspNRIWLGTFPTPEMAAVAYDVAALALKG 66
                             69******************9.....4489***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-121666IPR001471AP2/ERF domain
PROSITE profilePS5103222.3261674IPR001471AP2/ERF domain
SMARTSM003801.7E-311680IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-201676IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-281676IPR001471AP2/ERF domain
PRINTSPR003672.3E-71728IPR001471AP2/ERF domain
CDDcd000188.76E-271776No hitNo description
PRINTSPR003672.3E-75676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSTRAWRSNN ESGGAVYKGV RRRKSSGKWV SEIREPRSPN RIWLGTFPTP EMAAVAYDVA  60
ALALKGPHAE LNFPNSAASL PVPASNSSRD IQEAAALAAA AAGAAADALR PAGGGHHHQV  120
DYNSGGIAAE TYEHHHQTHN EFVDEDLIFD MPNVIANMAE GMLLSPPRYQ QYSYDHYDYD  180
YASTATDHNL WNYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157167.13e-97PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR09e-55ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A1S3YU881e-64A0A1S3YU88_TOBAC; ethylene-responsive transcription factor ERF024-like
TrEMBLA0A1U7Y4191e-64A0A1U7Y419_NICSY; ethylene-responsive transcription factor ERF024
STRINGXP_009793989.12e-65(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.14e-42ERF family protein