PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000510.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 533aa    MW: 60565.2 Da    PI: 8.4064
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000510.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-1311100198
                              EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                              ffkvl ++d +   +l+lp  f++++ ++ +e+   ++le esg+sW vk+  +   ++  +t+GW eF+k+ +L+  Df+vF ++
  Itr_sc000510.1_g00003.1  11 FFKVL-NEDFS--TLLRLPLLFTANYgKHLPEN--PVVLEIESGESWPVKI--EEDEEHQCFTQGWPEFAKDLRLELHDFLVFWFK 89 
                              77888.33333..359*******9995434444..5***************..999999************************998 PP

                              SSSEE..EEEEE- CS
                       B3  86 grsefelvvkvfr 98 
                                s+f  +v v+ 
  Itr_sc000510.1_g00003.1  90 CPSKF--LVEVYG 100
                              87777..887765 PP
2B350.53.7e-161582371089
                              HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                              +++++rl++p  f++e g    +s+ ++l+d+ g +W v ++   + +++r  +tkGWkeF  an+L +gD+++F+++++ +
  Itr_sc000510.1_g00003.1 158 YSNKSRLRIPTGFMRETGRM--GSMCVVLRDPVGMEWPVLISRhgKSHKDRSDMTKGWKEFKAANDLVDGDVCTFTHTETPG 237
                              456789***********854..8999***************776766667799***********************876433 PP
3B342.21.5e-132463221899
                              --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                              +p +f+++hg +   +k   le ++g++ ++ + +  ++gr++l+kGW+eF k   ++eg f+vF++dg+s f  +v +f+k
  Itr_sc000510.1_g00003.1 246 FPLEFVRRHGRN--LPKVACLEVPTGKVSKIHV-VHDSQGRIWLAKGWEEFTKNYSIREGHFLVFRYDGESHF--HVLIFDK 322
                              799******977..8899*********999999.4566678****************************9999..*****98 PP
4B354.42.3e-17436514386
                              EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              +v+ ps+v++++rl +p  fa++h +++ +s + +l +  grsW  k+  ++++++  +  GWk F+ +n+Lk+gD+++++ ++
  Itr_sc000510.1_g00003.1 436 SVMYPSYVSSENRLNIPLAFAKKHFLDQ-SSNDFMLVS-GGRSWPAKC--TRNGQHARIY-GWKAFAVDNKLKVGDVCILEIMK 514
                              6899********************8884.455777666.9********..9999988888.*******************9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-166102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-177102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.5338102IPR003340B3 DNA binding domain
CDDcd100171.12E-13999No hitNo description
PfamPF023621.5E-101197IPR003340B3 DNA binding domain
SMARTSM010195.1E-1211102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17146244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-19148240IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.76149247IPR003340B3 DNA binding domain
CDDcd100174.20E-14150237No hitNo description
SMARTSM010192.0E-8152239IPR003340B3 DNA binding domain
PfamPF023626.8E-13158235IPR003340B3 DNA binding domain
SMARTSM010195.3E-9240323IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-18243323IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-10245322IPR003340B3 DNA binding domain
CDDcd100176.47E-14245321No hitNo description
Gene3DG3DSA:2.40.330.106.8E-18245323IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.827249323IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-21426519IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-18427520IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.589434529IPR003340B3 DNA binding domain
SMARTSM010194.0E-10435529IPR003340B3 DNA binding domain
PfamPF023623.2E-15436515IPR003340B3 DNA binding domain
CDDcd100171.18E-17437511No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MAEPPERRPS FFKVLNEDFS TLLRLPLLFT ANYGKHLPEN PVVLEIESGE SWPVKIEEDE  60
EHQCFTQGWP EFAKDLRLEL HDFLVFWFKC PSKFLVEVYG KTGPAKIFNP PIKGKVSPKI  120
ERNDVSADAA AAAAASDDDG VTEKKKKSRP CFSVDMKYSN KSRLRIPTGF MRETGRMGSM  180
CVVLRDPVGM EWPVLISRHG KSHKDRSDMT KGWKEFKAAN DLVDGDVCTF THTETPGAWV  240
LQVQRFPLEF VRRHGRNLPK VACLEVPTGK VSKIHVVHDS QGRIWLAKGW EEFTKNYSIR  300
EGHFLVFRYD GESHFHVLIF DKTASEIEYP QIIVSHGGVE SLEDLAQKCG PNKRKRQEDQ  360
RFHHEIPSSD HQPKKTSAVT AVRVKVENSS DDEDSSPPLM TPKISTGEKQ SLVKTEMGAA  420
YERAKAFKSK NPFHISVMYP SYVSSENRLN IPLAFAKKHF LDQSSNDFML VSGGRSWPAK  480
CTRNGQHARI YGWKAFAVDN KLKVGDVCIL EIMKCQKLTI INIIVFHADE IDD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195010.11e-152PREDICTED: B3 domain-containing protein Os12g0591400-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-27B3 family protein