PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000518.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 323aa MW: 35098 Da PI: 6.451

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000518.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.9	5.2e-34	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Itr_sc000518.1_g00010.1 48 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 102 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.337	45	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-32	47	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-18	47	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-26	48	103	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-23	134	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MYQPNGVSSS NLVHSNAIGI QPLESGPSTM DPISGGNNLN NNPSLASKQR LRWTNELHER 60 FVDAVAQLGG PDRATPKGVL RVMGVQGLTI YHVKSHLQKY RLAKYLPDSS SDGKKADKKE 120 SRDMISNLDG SSGMQITEAL KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR 180 LSGVLSEAPG TGVNPAAESD NGTDPSTPVP TSESPHGDKH AKECAPAKSL SLDESFSSHH 240 EPLTPDSGGH ETSQIESPTG ERPSKLQKLD SGAALAQPNA MLTHPILESS LSPSYQQPDT 300 VFLTREHLSH SSGLSIGNED QRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019184442.1	0.0	PREDICTED: myb family transcription factor PHL7
Swissprot	Q9SJW0	1e-127	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	F6HD66	1e-167	F6HD66_VITVI; Uncharacterized protein
STRING	VIT_00s0475g00040.t01	1e-168	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-103	G2-like family protein