PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000521.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 183aa    MW: 20686.2 Da    PI: 8.7378
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000521.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.11.1e-33251521128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk..sgy 82 
                              lppG  F Ptd+el+++yLk+k++++k+++  +i+++diy+++P++L+ + ++++ + + yfF+  ++k++ g+r  ra+   +gy
  Itr_sc000521.1_g00006.1  25 LPPGHGFYPTDQELITKYLKHKAQNQKIHA-GIINDLDIYNYHPEELEaAnALNHWNGRRYFFTAFKRKTKDGTRGDRAVGggKGY 109
                              79***************************9.99**************8322332233356******************8776699* PP

                      NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              Wka+   +++++ +g ++g+k+ Lvf+   + +g+kt+W+m e+r 
  Itr_sc000521.1_g00006.1 110 WKASQAREPLKDGGGVVIGTKQPLVFH---DGEGKKTSWLMSEFRY 152
                              ************9**************...567788********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-3423157IPR003441NAC domain
PROSITE profilePS5100534.64825167IPR003441NAC domain
PfamPF023654.9E-1926151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAASCSAQRP NGYGDDDSDE WKRSLPPGHG FYPTDQELIT KYLKHKAQNQ KIHAGIINDL  60
DIYNYHPEEL EAANALNHWN GRRYFFTAFK RKTKDGTRGD RAVGGGKGYW KASQAREPLK  120
DGGGVVIGTK QPLVFHDGEG KKTSWLMSEF RYPSNVDPFP LYNQVLKVAF KCEPVLMCEP  180
ANY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-222415114139Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186512.16e-91PREDICTED: transcription factor JUNGBRUNNEN 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1556777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.15e-25NAC domain containing protein 32