PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000521.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WOX
Protein Properties Length: 161aa    MW: 18441.7 Da    PI: 9.0792
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000521.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-173696357
                             --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              R+++t eql++L++l+++   r ps+ee+e+++ +l    +++ ++V++WFqN+R +e++
  Itr_sc000521.1_g00018.1 36 ARWKPTVEQLQILKDLYYNqmIRRPSTEEIERISLRLrqlgKIEGKNVFYWFQNQRNRERH 96
                             6****************975689***********************************995 PP
2Wus_type_Homeobox87.71.2e-283596363
        Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63
                             ++RW Pt eQ++iL++ly+ + +r P++eei+ri+ +L++ Gkie+kNVfyWFQN++ Rer+
  Itr_sc000521.1_g00018.1 35 CARWKPTVEQLQILKDLYYnQMIRRPSTEEIERISLRLRQLGKIEGKNVFYWFQNQRNRERH 96
                             68***************9857889************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.4E-433101IPR001356Homeobox domain
SuperFamilySSF466891.45E-1136100IPR009057Homeodomain-like
PfamPF000464.7E-153696IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.1E-737100IPR009057Homeodomain-like
CDDcd000861.40E-53798No hitNo description
PROSITE profilePS5007110.2034197IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEGEREESIG QNHGLQQGGE ENNNNNGGCG SYNWCARWKP TVEQLQILKD LYYNQMIRRP  60
STEEIERISL RLRQLGKIEG KNVFYWFQNQ RNRERHPRKR PVTAIIAPPA LPDLHIYNNA  120
AKRSKTPPQT LSLFPMHGDG DGDGDSSVSL ELSLRPYSPK P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186509.11e-61PREDICTED: protein WUSCHEL-like
TrEMBLA0A3P6EFL94e-27A0A3P6EFL9_BRAOL; Uncharacterized protein
TrEMBLR0GAZ53e-26R0GAZ5_9BRAS; Uncharacterized protein
STRINGBostr.18351s0261.1.p3e-27(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-27WOX family protein