PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000526.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 385aa    MW: 43989.7 Da    PI: 5.4939
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000526.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.8e-36141052102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl k+ye++ed++++ ++sws+n++sf+v++++ef +++LpkyFkhsnf+SF+RQLn+YgFkkv+ e+         weF+++ F 
  Itr_sc000526.1_g00011.1  14 FLAKTYEMVEDPSTDPIVSWSQNNKSFIVKNPQEFCRDLLPKYFKHSNFSSFIRQLNTYGFKKVDPEQ---------WEFSNEDFV 90 
                              9***************************************************************9998.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+ + l++i+r+k 
  Itr_sc000526.1_g00011.1  91 RGHPHRLKNIHRRKP 105
                              ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.3E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.3E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDDACYSANA LPPFLAKTYE MVEDPSTDPI VSWSQNNKSF IVKNPQEFCR DLLPKYFKHS  60
NFSSFIRQLN TYGFKKVDPE QWEFSNEDFV RGHPHRLKNI HRRKPVHSHS AKNLHSSALN  120
ESERQGYKDD IEKLKSDKES LQLELKRHEE DQRGFAFQMQ GLSERAQQVE QRHKSMLSTL  180
SQMLDKSELA IGLVPRLGLP DRKRTLPGNN YMDYNQESSS QISTRENSVS TSFVNGEWLD  240
QLESSVIFWE NTLQAVCQTG IQLNSALEVD ESTSCAGSPS TQLSGEVGAN TSRIDVNSEP  300
NAPKVPTKEQ AETNVPTRVN DVFWEQFLTE NPGSTDPLEV QSERKDYDGK KSERKPVDLA  360
KFWWNKDNVN SLTEQPGHLT QAERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-211110326129Heat shock factor protein 1
5d5v_B5e-211110326129Heat shock factor protein 1
5d5v_D5e-211110326129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166641.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_019166642.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_019166643.10.0PREDICTED: heat stress transcription factor A-4c
SwissprotO494031e-99HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A314L5061e-167A0A314L506_NICAT; Heat stress transcription factor a-4a
STRINGXP_009796383.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-102HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]