PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000531.1_g00017.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SRS

Protein Properties

Length: 353aa MW: 37872.7 Da PI: 8.0204

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000531.1_g00017.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	229.2	7.6e-71	137	286	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87 +sg+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqq+la++++++ + a+aa + kr+ ++ s+l Itr_sc000531.1_g00017.1 137 TSGGVNCQDCGNQAKKDCTHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQHLASLQQQNLSLGAAAADNAKRQR--ESPSSLV 220 57899***************************************************9998877666666666654..7899* PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +t+l++++s e+ t+ +P+ev+s+avfrcv+vs++dd+ +++aYqtavsigGhvfkGiLydqG+e+ Itr_sc000531.1_g00017.1 221 CTRLPTTSSGLEVGTH-YPAEVNSPAVFRCVKVSAMDDEVDQYAYQTAVSIGGHVFKGILYDQGPEN 286 *****999888776.**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.2E-66	140	285	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-27	142	184	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.8E-26	236	284	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MSGFFSLGGG PGNKDPQVQE QGEDQNLGAT NNNNSSLYLF KNEEIYNKGF ELWQQYYHMH 60 QQRAHHVHHH HPHLVDFSVG VGAAAPPNNP AAAGGGGSSS SSGNLVGDDQ NQSAGAGYSF 120 RSSSSGFRVM RPSSGGTSGG VNCQDCGNQA KKDCTHMRCR TCCKSRGFQC QTHVKSTWVP 180 AAKRRERQQH LASLQQQNLS LGAAAADNAK RQRESPSSLV CTRLPTTSSG LEVGTHYPAE 240 VNSPAVFRCV KVSAMDDEVD QYAYQTAVSI GGHVFKGILY DQGPENRYNS SSVPGESSSA 300 AAQHHQPLNL ISGATASHHQ HQQPGITMLD PSLYPTPLTA IMAGTQFFPP PRP

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MSGFFSLGGG PGNKDPQVQE QGEDQNLGAT NNNNSSLYLF KNEEIYNKGF ELWQQYYHMH  60
QQRAHHVHHH HPHLVDFSVG VGAAAPPNNP AAAGGGGSSS SSGNLVGDDQ NQSAGAGYSF  120
RSSSSGFRVM RPSSGGTSGG VNCQDCGNQA KKDCTHMRCR TCCKSRGFQC QTHVKSTWVP  180
AAKRRERQQH LASLQQQNLS LGAAAADNAK RQRESPSSLV CTRLPTTSSG LEVGTHYPAE  240
VNSPAVFRCV KVSAMDDEVD QYAYQTAVSI GGHVFKGILY DQGPENRYNS SSVPGESSSA  300
AAQHHQPLNL ISGATASHHQ HQQPGITMLD PSLYPTPLTA IMAGTQFFPP PRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174184.1	1e-165	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Refseq	XP_019174185.1	1e-165	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	5e-81	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A328DRT0	1e-123	A0A328DRT0_9ASTE; Uncharacterized protein
STRING	XP_009599252.1	1e-122	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-73	SHI-related sequence 5

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]