PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000535.1_g00031.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 408aa MW: 45336.7 Da PI: 6.9887

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000535.1_g00031.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.9	4.7e-33	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt +LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl Itr_sc000535.1_g00031.1 35 KPRLKWTADLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 89 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.925	32	92	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.0E-31	33	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.65E-16	34	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	35	90	IPR006447	Myb domain, plants
Pfam	PF00249	7.0E-10	37	88	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-24	135	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MHPSTRMSVP PERHLFLQGG SGHGDSGLVL STDAKPRLKW TADLHERFIE AVNQLGGADK 60 ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHLQANSG SNKTTTGGSG TDKIYEANAN 120 HMNNPSTGPQ TNKNVHISEA IQMQIEVQRR LHEQLEVQRH LQLRIEAQGK YLQAVLEKAQ 180 ETLGRQNLGT MGLEAARVQL SELVSKVSNQ CLNSAFSEMK EAPGLGPQQA RATQPTDCSL 240 DSCLTSCEGA SREHEMHNSQ MGLGTLNLRA YMDPKDMENE TRRQQSEVRW SDELKESGKF 300 LCGMAEDLEK GDDKERKCSD LSMSIGLEGG RWNSKKSYEF TGTDGDAKLY SRPADRSDSS 360 AGKTEKQKMA QQEYKLPYFG PKLDLNTEDE TDVASSCKQF DLNGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MHPSTRMSVP PERHLFLQGG SGHGDSGLVL STDAKPRLKW TADLHERFIE AVNQLGGADK  60
ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHLQANSG SNKTTTGGSG TDKIYEANAN  120
HMNNPSTGPQ TNKNVHISEA IQMQIEVQRR LHEQLEVQRH LQLRIEAQGK YLQAVLEKAQ  180
ETLGRQNLGT MGLEAARVQL SELVSKVSNQ CLNSAFSEMK EAPGLGPQQA RATQPTDCSL  240
DSCLTSCEGA SREHEMHNSQ MGLGTLNLRA YMDPKDMENE TRRQQSEVRW SDELKESGKF  300
LCGMAEDLEK GDDKERKCSD LSMSIGLEGG RWNSKKSYEF TGTDGDAKLY SRPADRSDSS  360
AGKTEKQKMA QQEYKLPYFG PKLDLNTEDE TDVASSCKQF DLNGFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-20	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019153103.1	0.0	PREDICTED: myb-related protein 2-like isoform X1
Swissprot	Q9SQQ9	1e-129	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A484MRS1	0.0	A0A484MRS1_9ASTE; Uncharacterized protein
STRING	XP_009758035.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-129	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]