PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000539.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 508aa MW: 57005.5 Da PI: 5.3858

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000539.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	330	378	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r ++ Er+RR++i+++++ Lr l+P+ +K++ a+iL A++Y+++Lq Itr_sc000539.1_g00008.1 330 RSKNLVTERNRRNKIKDGLFALRALVPNI-----TKMDRASILGDAIDYVRELQ 378 5666778*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.7E-17	45	195	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	6.55E-14	326	382	No hit	No description
SuperFamily	SSF47459	8.77E-18	327	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.031	328	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-10	330	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-17	330	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-15	334	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00264	445	484	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MSAGNQEGHY YYYTNCRGFW ETVFINAISV DEPIMGASET ALHWLRPLVE SKNWDYCVVW 60 RLGDDPSRFI EWVGCCCCGA YGVLCNVKKE KGVEEQDLGP LCRDVHVQHH VRTMACEALA 120 GFPSSIPLYS GIRGEVVILN EPKWLIHGYA SDSKAPDGIS GTQVLIPVAG GLIELYSSRL 180 IPKDQKTIEF VNNRFKFYVE EAMNDMAYFS MSRQQQALDL SPNECQSSWL APLHCADLPE 240 PCSNLSIQGS STGSTPASTE RLQCDSVSNL VSLSESFNQS NELFNEKLKL HCNQHPTTMK 300 SDEFSLSCVT YDIARNAIVT GQKRQRGQYR SKNLVTERNR RNKIKDGLFA LRALVPNITK 360 MDRASILGDA IDYVRELQQI VKELEDELNE IDAEDESQRI AEHVTPDLNG KSKDSEQTSK 420 KSNNVLKKAH VEVNQIDSRV FMLRFIGKHS RGGFSRLMET MDSLGLQVLD ANVTTLNEEV 480 LSIFRAEAKA DGMCNSRTLE CALVELTN

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MSAGNQEGHY YYYTNCRGFW ETVFINAISV DEPIMGASET ALHWLRPLVE SKNWDYCVVW  60
RLGDDPSRFI EWVGCCCCGA YGVLCNVKKE KGVEEQDLGP LCRDVHVQHH VRTMACEALA  120
GFPSSIPLYS GIRGEVVILN EPKWLIHGYA SDSKAPDGIS GTQVLIPVAG GLIELYSSRL  180
IPKDQKTIEF VNNRFKFYVE EAMNDMAYFS MSRQQQALDL SPNECQSSWL APLHCADLPE  240
PCSNLSIQGS STGSTPASTE RLQCDSVSNL VSLSESFNQS NELFNEKLKL HCNQHPTTMK  300
SDEFSLSCVT YDIARNAIVT GQKRQRGQYR SKNLVTERNR RNKIKDGLFA LRALVPNITK  360
MDRASILGDA IDYVRELQQI VKELEDELNE IDAEDESQRI AEHVTPDLNG KSKDSEQTSK  420
KSNNVLKKAH VEVNQIDSRV FMLRFIGKHS RGGFSRLMET MDSLGLQVLD ANVTTLNEEV  480
LSIFRAEAKA DGMCNSRTLE CALVELTN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019176431.1	0.0	PREDICTED: transcription factor ABORTED MICROSPORES
TrEMBL	A0A328DRU3	0.0	A0A328DRU3_9ASTE; Uncharacterized protein
STRING	Solyc05g005300.2.1	1e-148	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9929	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	2e-45	bHLH family protein