PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000540.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 258aa    MW: 27234.5 Da    PI: 5.6698
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000540.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.64.3e-20346245
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             +i+nks  +vtfskRr+g++KKA+ LS+LC+a+va+iifs+ g+
  Itr_sc000540.1_g00001.1  3 KIQNKSSLEVTFSKRRAGLFKKASMLSTLCGADVAIIIFSPAGN 46
                             599**************************************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-19154IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.32145IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-20270IPR002100Transcription factor, MADS-box
PfamPF003191.1E-21351IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-61631IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-63152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVKIQNKSSL EVTFSKRRAG LFKKASMLST LCGADVAIII FSPAGNKVFS FGHPTVEAVV  60
ERFLRENNPE PVNETGGGAL AMEQIIEAQR NARVQELNME LTRLEAIFEL EKKRGEAIDG  120
VVEANREAHG WMRGSYDDIS FEQLVTLKSG MENLMKEIQQ KAHDQLMAVH GNGTPFNPYA  180
SGVFSNGNMV SGDPTSEFNF GTSGGAPGAH PSTSGGTAAT SAFPGSSSMA SGNNAGSPCA  240
AGTSSDACGN FGAGRPFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196307.11e-101PREDICTED: agamous-like MADS-box protein AGL62
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-41AGAMOUS-like 62