PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000547.1_g00038.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 329aa    MW: 37178.4 Da    PI: 5.8564
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000547.1_g00038.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg W++eEde+l++++  +G g+W+ ++ + g+ R++k+c++rw +yl
  Itr_sc000547.1_g00038.1 14 RGLWSPEEDEKLIRYISTHGYGCWSEVPDKAGLQRCGKSCRLRWINYL 61
                             788*******************************************97 PP
2Myb_DNA-binding54.52.7e-1767111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rgr+T+eE++l+++++   G++ W+ Ia++++ gRt++++k++w+++
  Itr_sc000547.1_g00038.1  67 RGRFTPEEEKLIINLHGAVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                              89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.363961IPR017930Myb domain
SuperFamilySSF466892.16E-3011108IPR009057Homeodomain-like
SMARTSM007179.8E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001673.79E-121761No hitNo description
PROSITE profilePS5129425.462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2565117IPR009057Homeodomain-like
SMARTSM007177.0E-1766114IPR001005SANT/Myb domain
PfamPF002497.8E-1667111IPR001005SANT/Myb domain
CDDcd001671.21E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIS THGYGCWSEV PDKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIN LHGAVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKLKKPQ  120
STSHQTTTTI IGTNSNETHQ QIQFPFNNNP TNDQRFFTQD LATKPLQYQE TLFSTPNIIT  180
SIAPFSTFDP LFQAGQGDCS ANRVDPLFQD SNEFWQQQIQ TTTSFGSGMG SGYLLPPLMD  240
DLGPLDVAPP CSLFDAARDN QVSEWGVDTT QQQQQQRQQQ QQQCPGSNYL LWDEVTEGNL  300
GGEEEELIGV GVPTTSPMAA MLSSFPPSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141167108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168856.11e-170PREDICTED: transcription factor MYB35-like
TrEMBLA0A2C9WJK01e-106A0A2C9WJK0_MANES; Uncharacterized protein
STRINGcassava4.1_030636m1e-107(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.12e-83myb domain protein 103