PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000552.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 323aa    MW: 34707.9 Da    PI: 6.5234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000552.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09146190554
                              HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              h+++Er RR+ri +++  L++l+P+ +      K + a +L + v+Y+k L
  Itr_sc000552.1_g00004.1 146 HSIAERLRRERIAERIRALQDLVPSvN------KTDRAVMLDEIVDYVKFL 190
                              99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-14139199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.069141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-14143195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-7146190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSNNPTDGSS EDFFDQILGF PAYAAADANL AGTASAAPMM LQLSSGDGSA HLGGVRIGMG  60
LGGVGGPFHG TGAAPFPLGL SLEQGRGEFM KMDESSASMK MDIRASSSMK PGFHGQLMPS  120
SVPAMPHPPA IRPRVRARRG QATDPHSIAE RLRRERIAER IRALQDLVPS VNKTDRAVML  180
DEIVDYVKFL RLQVKYGYIV ILKMENGWCR SVMTLKMEEM VLSMSRLGGA GAVAPLVTDI  240
PISLVEEEGG SEAGRTQPAW EKWSNDGTER QVAKLMEENV GAAMQFLQSK ALCIMPISLA  300
SAIYHSQPPD TTPLVKPETN PPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019164896.11e-178PREDICTED: transcription factor UNE12
SwissprotO227681e-108UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A484KCX21e-161A0A484KCX2_9ASTE; Uncharacterized protein
STRINGMigut.D00370.1.p1e-138(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.22e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]