PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000553.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 153aa    MW: 16945.5 Da    PI: 10.0835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000553.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.5e-153077255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ykG++ +k +grWv eIr       ++r +lg++ t+  Aa+a++ a  +l+g
  Itr_sc000553.1_g00003.1 30 PYKGICLRK-WGRWVTEIRFA-----NTRLWLGSYHTPVAAARAYDVALFYLRG 77
                             59*****99.**********3.....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.7693085IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-173085IPR016177DNA-binding domain
SMARTSM003803.9E-243091IPR001471AP2/ERF domain
PRINTSPR003674.5E-93142IPR001471AP2/ERF domain
PfamPF008474.3E-93177IPR001471AP2/ERF domain
CDDcd000181.52E-203186No hitNo description
Gene3DG3DSA:3.30.730.109.8E-233186IPR001471AP2/ERF domain
PRINTSPR003674.5E-96787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MAAGAGDGVG ATAKVGGMEK KKRQPRQKNP YKGICLRKWG RWVTEIRFAN TRLWLGSYHT  60
PVAAARAYDV ALFYLRGPGA KLNFPEFAVG DGQHRELTPK EIQNRAMAVG CRIDAIQRGL  120
HISPAQMSVN VTDHHPEPDV YVTPDLNKCP HLD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152321.17e-41PREDICTED: ethylene-responsive transcription factor RAP2-1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.11e-32related to AP2 1