PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000553.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 228aa MW: 25662.1 Da PI: 9.2082

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000553.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.6	1.6e-21	84	143	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Itr_sc000553.1_g00005.1 84 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 143 7***************99************************************97 PP
2	Wus_type_Homeobox	118.4	3.1e-38	84	145	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq Itr_sc000553.1_g00005.1 84 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 145 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.187	79	144	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-13	81	150	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-7	81	148	IPR001356	Homeobox domain
CDD	cd00086	1.46E-5	84	145	No hit	No description
Pfam	PF00046	3.2E-19	84	143	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.8E-8	85	143	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MKVHQFTRGF IFEQQDQVPS LSLGCKRFRP LAPKLSSGGG DAAAAISVTP PAFDLKSFIK 60 PESSPRSPDE KKDSPQAETH PGGTRWNPTQ EQIGILEMLY RGGMRTPNAQ QIEQITAQLG 120 KYGKIEGKNV FYWFQNHKAR ERQKQKRNSL GLNHSPRTPP PAAPAPPPIT TAPSLTFDPW 180 GEDSACKRKY RPWAFECLEE EKRWPCSREE LEGDGTLELF PLHPELGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155863.1	1e-138	PREDICTED: WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	3e-74	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	C0IN09	1e-99	C0IN09_PETHY; WOX4
STRING	XP_009776871.1	7e-99	(Nicotiana sylvestris)
STRING	XP_009613514.1	7e-99	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6186	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	9e-73	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]