PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000561.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 115aa    MW: 13087.3 Da    PI: 10.3031
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000561.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS85.21.1e-2629618122
                     GRAS  18 elaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                              +la+al++++  l+ +++ +m+++a yf+eAL +r++r        l ps+ +  + + +   +  f+e +P+lkf+h+taNqaIl
  Itr_sc000561.1_g00004.1   2 KLAEALVKQIGFLVVSQAGAMRKVAIYFAEALIQRIYR--------LYPSNHN--DFAFSGLLQMHFYESCPYLKFAHFTANQAIL 77 
                              689***********************************........4444444..56667667777******************** PP

                     GRAS 104 eavegeervHiiDfdisqG 122
                              ea+++++rvH iDf+++ G
  Itr_sc000561.1_g00004.1  78 EAFANKNRVHAIDFSMKLG 96 
                              ***************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.5341115IPR005202Transcription factor GRAS
PfamPF035143.9E-24296IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MKLAEALVKQ IGFLVVSQAG AMRKVAIYFA EALIQRIYRL YPSNHNDFAF SGLLQMHFYE  60
SCPYLKFAHF TANQAILEAF ANKNRVHAID FSMKLGCNGR LSSRLKLATE RNLKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160270.12e-54PREDICTED: DELLA protein GAI1-like
SwissprotQ8S4W73e-47GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A1S3YKV32e-49A0A1S3YKV3_TOBAC; DELLA protein GAI1-like
TrEMBLA0A1U7XHE42e-49A0A1U7XHE4_NICSY; DELLA protein GAI1-like
STRINGXP_009789076.13e-50(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.14e-44GRAS family protein