PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000565.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 123aa    MW: 13799.4 Da    PI: 6.8044
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000565.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.71.4e-241874155
                  G2-like  1 kprlrWtpeLHerFveaveqLGGse..kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             k +l+Wt eLH+rF++a+  LGG++   A+P++il lm+v+gLt+e+v+SHLQkYR 
  Itr_sc000565.1_g00005.1 18 KRKLEWTLELHSRFMDAIIILGGIQssDAVPSQILGLMNVPGLTRENVASHLQKYRK 74
                             679********************863369***************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-221674IPR009057Homeodomain-like
SuperFamilySSF466891.11E-131774IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-191874IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MDNTNVENSA AAVTATAKRK LEWTLELHSR FMDAIIILGG IQSSDAVPSQ ILGLMNVPGL  60
TRENVASHLQ KYRKLETTEP KRNNKLARLD KQYSIQQQRE LDASSSYSSY NGYDHGVSSW  120
DDI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019200162.15e-21PREDICTED: transcription factor LUX-like
SwissprotQ9LTH44e-14PCLL_ARATH; Transcription factor BOA
TrEMBLS8CJ475e-16S8CJ47_9LAMI; Uncharacterized protein (Fragment)
STRINGGLYMA05G34523.14e-15(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24322354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.12e-16G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]