PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000567.1_g00025.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 342aa    MW: 38498.2 Da    PI: 7.4996
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000567.1_g00025.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.68.9e-08128149426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              + C  f++ G C +Gd+C FaHg
  Itr_sc000567.1_g00025.1 128 SVCAEFRK-GSCVRGDNCEFAHG 149
                              6799****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.79E-5123153IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4124150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-6125151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.145125151IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-5128149IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287159183IPR000571Zinc finger, CCCH-type
SMARTSM003562.4159182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGSDNCGDHL HKFHPSHQLF LNRKYLREPE IPPRKLLSRR PSGDPEMPPP HMESPTKMED  60
TQFQKFLPYN NSDDDDDDPY SSDNFRMFEF KVRRCTRSRS HDWTDCPFAH PGEKARRRDP  120
RKYHYSGSVC AEFRKGSCVR GDNCEFAHGV FECWLHPTRY RTEACKDGKN CKRKVCFFAH  180
TPRQLRVLPP DCHDGNNSPM NSPNMNHCCA CCHSPNSTLM AAISHMSPPV SPATAKSPFS  240
RFGGPENCGI MDQFEQNPNS MADLVSSLES MNLNVTNAAY SHHMKIPAMV DLNFNVNNLS  300
ADPPTPTPSK LLTAGGGAAT TKYYNDSGLP GIDLGWVNDL LT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193040.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA12e-76C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A1S3YP141e-124A0A1S3YP14_TOBAC; zinc finger CCCH domain-containing protein 2-like
STRINGXP_009789499.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-71C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]