PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000569.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 602aa    MW: 68095.5 Da    PI: 6.0936
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000569.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84.3e-1172128155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++gr++A+++d s+ n  ++kr +   + ++e Aa+ ++ a++k++g
  Itr_sc000569.1_g00008.1  72 SVYRGVTRHRWTGRYEAHLWDKSIwNStQNKRGRQSAYESEEAAARTYDLAALKYWG 128
                              78*******************77779999999999********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577122No hitNo description
CDDcd000181.92E-1572137No hitNo description
PfamPF008471.0E-872128IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1372138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-1073136IPR001471AP2/ERF domain
PROSITE profilePS5103218.29473136IPR001471AP2/ERF domain
SMARTSM003801.3E-1573142IPR001471AP2/ERF domain
SMARTSM003801.6E-4294399IPR001471AP2/ERF domain
CDDcd000185.91E-13295395No hitNo description
SuperFamilySSF541714.12E-5368395IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-6368393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MMKRFRLPCS SSSSSCSSSS SCIVGSGGEI EVLPEPVKPI PQPEPRPKRP RTKRNKILNA  60
DSPTSGSTGR SSVYRGVTRH RWTGRYEAHL WDKSIWNSTQ NKRGRQSAYE SEEAAARTYD  120
LAALKYWGPG TMLNFPIETY SKELEEMEKL SREEFLASLR RRSSGFSRGV SKYRGVARMK  180
RLPFVAKAQL YFLILPPHFP EAGCWTKSFK PPPNNPPSYW VLDLAIQASA QQYPSYRVLD  240
LALSLASAQQ KLCVEINILA KTTHKGMIYD FKDLWSENLS LTSKEIWNFS LTLHHHNGRW  300
EARIGRVSGN KYLYLGTFRL DRWFLRFTIP RTYANRVLFL LYVLIKVSGC ERIYGSYCDS  360
FTSIIEGTQE EAATAYDMAA IEYRGSNAVT NFDISVYADK LKEIRERNEK EQQGNDESSC  420
EVESNAQEEH KEESQKWNEE EKYFVEETVP MLEDARSNSE GRMEHPKIPK LEFAPSPSSP  480
MITAIDPLEE PESFWNSPCM DAGHDSFPVH DLHLDEKPSY LLDFFNESSI GNSLDFLFEE  540
PSSGNEFGCS DICGSTTLIS GEFEAMVNEG HNAAFTAPSP SSNSTALSVY AEISAASKLL  600
NC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161355.11e-125PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A484KSM52e-76A0A484KSM5_9ASTE; Uncharacterized protein
STRINGXP_009761562.12e-65(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-37AP2 family protein