PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000577.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 496aa    MW: 55360.4 Da    PI: 5.9876
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000577.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.98.1e-40220296177
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                              +Cqv+gC  dls+ k+y+rrh+vC+ hsk+++v+v+g+eqrfCqqCsrfh lsefD++krsCr+ La+hnerrrk+q
  Itr_sc000577.1_g00010.1 220 ICQVHGCFRDLSSSKDYYRRHRVCNEHSKTTKVIVDGIEQRFCQQCSRFHLLSEFDDDKRSCRKSLAGHNERRRKPQ 296
                              5**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-33214282IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.009218295IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-37219300IPR004333Transcription factor, SBP-box
PfamPF031103.8E-32221294IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDFMSYAFEG SSGLELAAAA ESLTGGSGRL VVNERMNLKS LFSPHQIHDD DESPNHEGAE  60
FMEFGLPQPP VCVDPSLRRV SSSDDKDLAE MMLSSSSHPP PVTVFGRIPA PGMEIEEAAC  120
NWLPRYHNFN LRSEETDNQS LFKGASQTTN FESPHSAAIP VNKRLVDSNK VKSGQNSKEK  180
LGDLSPSMEE AAATAETSSA TVVKRARITN LSSSNSHPPI CQVHGCFRDL SSSKDYYRRH  240
RVCNEHSKTT KVIVDGIEQR FCQQCSRFHL LSEFDDDKRS CRKSLAGHNE RRRKPQFDTH  300
HGPRFFDMTA LQTEQFFLPE LLPVNYFCQE LENTSSIRST KTDEKHISFS KLGAPKKSKT  360
HGTQKPEYYP LSSKNNTTIQ QFPTAENPST SAHSLLSSHP EIPANILASD WDLGLCSGVL  420
EMEGRRSSGY DAVDGNMMSV YYEGEMDENS ESAENGPTID LEQLSTHLQR VEHQRNLSAQ  480
TKQLESNNLF YCFTSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-26212294284squamosa promoter binding protein-like 4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165047.10.0PREDICTED: squamosa promoter-binding-like protein 6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.13e-50SBP family protein