PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000582.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19613.4 Da    PI: 9.9441
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000582.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-162055136
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaeva 36
                             +rien+  r+vtfskR+ g++KKA E+S+LC+ +v 
  Itr_sc000582.1_g00011.1 20 SRIENDAHRTVTFSKRLIGLFKKAIEISTLCGYNVN 55
                             59******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-121275IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.0681258IPR002100Transcription factor, MADS-box
CDDcd001201.87E-181357No hitNo description
SuperFamilySSF554559.16E-161358IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-101434IPR002100Transcription factor, MADS-box
PfamPF003196.8E-142157IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-103449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MSSNNNTRRV HRGRQKIPLS RIENDAHRTV TFSKRLIGLF KKAIEISTLC GYNVNAVLDK  60
YVAESENRTT EANVTKELLR SQKDADIRLA NHQINVLEAA IQQEMKVNEA LTEAVKGMPS  120
ISNLPLAELL SMKRQMEILR SNVFQILNPQ PTMPVQTQAL TTQSDDVNPS GATPF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185048.13e-81PREDICTED: MADS-box transcription factor 23-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-15AGAMOUS-like 61