PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000583.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 339aa    MW: 36890.4 Da    PI: 5.8706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000583.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12126177155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h ++Er+RR+++N+ ++ +r+++P++   + ++ + a+i   A++++k+L+
  Itr_sc000583.1_g00008.1 126 QRMTHIAVERNRRKQMNEYLAVIRSMMPPS---YVQRGDQASIIGGAINFVKELE 177
                              79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.85E-12124181No hitNo description
SuperFamilySSF474591.31E-15125192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12125181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.513125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-8131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MALETVIYPQ DSLVYGCKEF FGGGGWGGAY DFSSQGDVDK AFLGILEDNT TTSMDNQSLH  60
GYWDPNSSPE ACTGGADHRP SLLAVDGSLP PAAAVEQAAA TLSAAAGRRK RRRTRTCKNK  120
EELENQRMTH IAVERNRRKQ MNEYLAVIRS MMPPSYVQRG DQASIIGGAI NFVKELEQHL  180
QTLEAHNRVN NNNNNQPDNG GVSSPPLFAD FFTFPQYSKT QGGTNGVGSS AAAPEAAPAV  240
APAENRSALA DIEVTMVESH ANLKILSKKR PRQLLKIVAN LQYLWLTVLH LNVTTVDQMV  300
LYSLSVKLED GCQLTTVDEI ADAVHQLLAR IQEEAACTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108112RKRRR
2108113RKRRRT
3126137RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174067.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T43e-86BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1U8B9D61e-127A0A1U8B9D6_NELNU; transcription factor bHLH96
STRINGXP_010272971.11e-128(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]