PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000587.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 272aa    MW: 30417.2 Da    PI: 6.2559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000587.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-08155202455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Itr_sc000587.1_g00015.1 155 SHSLAERVRRGKINERLKCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 202
                              8*************************9....35599999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.14E-10149206No hitNo description
SuperFamilySSF474592.22E-16149219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.199151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-16151215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MADHFRQLFP LLSVDPSMEV GQFPELINPN FGEIPGPNFQ TLMGFSQQDQ FLSPAAQFAA  60
PNSLHYEAKA APRAPGASAS ILPGNDALET KMKPADYTTM ESCSPNSSSP AVSEIGTRRK  120
HSVGRGKRKK SSEEEETKPM EVVHVRARRG QATDSHSLAE RVRRGKINER LKCLQDIVPG  180
CYKTMGMAVM LDEIINYVQS LQNQVEFLSM KLTEASSYYD FNSETEIIET MQRAKAYEDM  240
KMQKQVKDGY EGLSTSNQHN NPFDQQSFGC YP
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177103.11e-173PREDICTED: transcription factor BEE 1-like
SwissprotQ8GZ131e-61BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A1J6HUX52e-84A0A1J6HUX5_NICAT; Transcription factor bee 3
STRINGXP_009777020.13e-82(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-63BR enhanced expression 1
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]