PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000596.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 357aa    MW: 38941.8 Da    PI: 4.8609
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000596.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.91.5e-26117177259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgynWrKYGqK++ g++fp++YYrC++    +C +kk++++s+edp+v+++ Y+g+H+++
  Itr_sc000596.1_g00008.1 117 DDGYNWRKYGQKKILGAQFPKGYYRCSHLhsqKCLAKKEIQKSDEDPTVFNVRYRGTHTCN 177
                              8**************************98788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.012111174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-25113177IPR003657WRKY domain
SuperFamilySSF1182905.62E-23115178IPR003657WRKY domain
SMARTSM007743.8E-33116178IPR003657WRKY domain
PfamPF031063.7E-23117176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MENEFGVDGE FNLNELISEL LQGRDAANRL QMCLNNAPLL PSSSSSSSQD WSCEVLANKV  60
QASLDNALCM LNHAGRNESS DSDREVRDPT SGRRRKAAVW TDQVQVSPGE GLEEAHDDGY  120
NWRKYGQKKI LGAQFPKGYY RCSHLHSQKC LAKKEIQKSD EDPTVFNVRY RGTHTCNNNP  180
SPRPLDNEEP PAPSTLQIQQ EENLLNLQRN LKIKTDNIEP SSHSHGNPFP SSHDFAAASS  240
SGVIKVGEIH CGFPQPLTNS FVANVSPSFV SPATSGSSCF TVSPTTPHVE NLGGGGGQFV  300
PTTTTSDLQM IMEIPTSTSG TNTPVVGMGF PFDATMGFDF NFTFDNNNDN NSAGFFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-18117176968OsWRKY45
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178067.10.0PREDICTED: probable WRKY transcription factor 53
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-34WRKY family protein