PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000616.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 168aa MW: 19161.9 Da PI: 9.0774

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000616.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00079	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k F++ L H +H Itr_sc000616.1_g00013.1 40 FECKTCQKKFKSFQALGGHRASH 62 89**********99999998887 PP
2	zf-C2H2	11.5	0.00094	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F L H+r+H Itr_sc000616.1_g00013.1 83 HECPVCGLEFDLGQALGGHMRKH 105 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.097	40	67	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.2	40	62	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.62E-6	40	105	No hit	No description
Pfam	PF13912	3.4E-10	40	64	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.9E-9	82	108	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.785	83	115	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.18	83	105	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MTLKRSREEV AAEAEALAMA NCLVLLSRPA EKTAPSIWEF ECKTCQKKFK SFQALGGHRA 60 SHKRPKIDQQ NLQHNNVNMK KRHECPVCGL EFDLGQALGG HMRKHRDQLH SDDKKSPDSF 120 TVTTVKNEEH STGIKKKNEV LIDLNFTLLE NDSIVHRRFV PTTLDLFV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019159845.1	2e-80	PREDICTED: zinc finger protein ZAT8-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	1e-29	C2H2 family protein