PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000625.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 217aa    MW: 24470.3 Da    PI: 8.4474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000625.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-18126176255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp+      r++lg+++t  +Aa+a++ a+ k++g
  Itr_sc000625.1_g00007.1 126 RYRGVRRRP-WGKFAAEIRDPTRK--GSRIWLGTYDTDIDAARAYDCAAFKMRG 176
                              7********.**********8542..4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.684126184IPR001471AP2/ERF domain
SMARTSM003809.4E-36126190IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23126185IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-31126185IPR001471AP2/ERF domain
PfamPF008472.4E-13126176IPR001471AP2/ERF domain
PRINTSPR003674.1E-13127138IPR001471AP2/ERF domain
CDDcd000183.99E-23134184No hitNo description
PRINTSPR003674.1E-13166186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MNDTCMMTTT DEYMTLDLIS QYLLGDFAST EAFIGNLGFC FPDDFNDFRP FSGSDKPESS  60
TSVSDSVSPV SDLKRPDSPS RYFNLDLDFP EFESKPDIVR STPDSSSKLQ NSAGEKESGN  120
GGKGRRYRGV RRRPWGKFAA EIRDPTRKGS RIWLGTYDTD IDAARAYDCA AFKMRGRKAI  180
LNFPLEAGKS GPPVNHGRNR RREMKSREVS RVKEEIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-27123185264ATERF1
3gcc_A2e-27123185264ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019200545.11e-112PREDICTED: ethylene-responsive transcription factor ERF107-like
TrEMBLQ84XB07e-71Q84XB0_SOLLC; Ethylene response factor 4
STRINGSolyc05g052030.1.11e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.15e-33ERF family protein