PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000626.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 183aa MW: 21220.7 Da PI: 5.3586

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000626.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.2	8.3e-14	85	144	5	64
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 +++rr+ +NRe+ArrsR RKk ++eL v ++ +eN L ++l++++++ +k+ +e++ Itr_sc000626.1_g00009.1 85 RKQRRMVSNRESARRSRMRKKRHLDELWSQVLAFRTENCNLLDRLNQISENHDKVLQENM 144 79*****************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.1E-13	81	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.645	83	146	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.2E-12	85	144	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.6E-10	85	134	No hit	No description
SuperFamily	SSF57959	5.34E-12	85	135	No hit	No description
CDD	cd14702	7.18E-18	86	137	No hit	No description
PROSITE pattern	PS00036	0	88	103	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MIPSVETTGI NYFAAESPFT LPPLDFTFNS SPSIDYFTRF LNINNNPQNS LPIITPPDFS 60 LSASMSNNST SDESEEQHHR IIDERKQRRM VSNRESARRS RMRKKRHLDE LWSQVLAFRT 120 ENCNLLDRLN QISENHDKVL QENMRLKEEA SGLRRLVVEL RDGGADDPFS DLRDLEDIKC 180 SFT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019180314.1	1e-116	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	5e-35	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	M1AC52	2e-56	M1AC52_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400019465	3e-57	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA947	24	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13600.1	4e-37	basic leucine-zipper 58

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]