PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000630.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 570aa    MW: 62275.3 Da    PI: 7.04
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000630.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41e-31294350259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +DgynWrKYGqK vkgs++prsYYrCt+ +Cpvkkkvers   ++++eitY+g+Hnhe
  Itr_sc000630.1_g00017.1 294 RDGYNWRKYGQKLVKGSDCPRSYYRCTHLKCPVKKKVERSV-GGHITEITYKGQHNHE 350
                              7****************************************.***************7 PP
2WRKY105.33.2e-33466524159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+ +prsYYrCt++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Itr_sc000630.1_g00017.1 466 LDDGYKWRKYGQKVVKGNANPRSYYRCTYSGCSVRKHVERASTDPKAVITTYEGKHNHD 524
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.986288352IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-27291352IPR003657WRKY domain
SuperFamilySSF1182905.36E-25292352IPR003657WRKY domain
SMARTSM007748.6E-34293351IPR003657WRKY domain
PfamPF031069.3E-24295350IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-36451526IPR003657WRKY domain
SuperFamilySSF1182905.62E-29458526IPR003657WRKY domain
PROSITE profilePS5081136.942461526IPR003657WRKY domain
SMARTSM007744.1E-38466525IPR003657WRKY domain
PfamPF031066.1E-26467524IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MSEITERGSI VAGPSRPTAL AIAPRPPLES FFSDGFIPGF SPGPMTLVSG FFADSDGCSF  60
SQLLAGAMAS PLAKPSVLED SSAKKGSSGA GSEKQSGYKQ NRPVSLAVAA LSPLLVVPPG  120
LSPSGLLNSP GFLSPIQITA SIPLSIACFV LANAMLKILD LSVKMCIQNA GCKVNSNQVG  180
QPWPMGKADL APSPYALLLG WGLRSPFGMS HQQALAHVTA QAAINQSYRQ MQTEYQQQSP  240
PADAFEHESS LMPNDSFQFQ VDDMLDAESL KSEPVEVSQS LRKPAPGALE RPARDGYNWR  300
KYGQKLVKGS DCPRSYYRCT HLKCPVKKKV ERSVGGHITE ITYKGQHNHE LPNPNKRRKD  360
ECDLDGGENI QVNSEIASHS WTEMNTSIEA EFSESAQLPT KLPSEQLDVG CDLDEMEETA  420
MALDEDDGQN PKKRSLEVVS SVMPSSHKTV TEPRIIVQTR SDVDLLDDGY KWRKYGQKVV  480
KGNANPRSYY RCTYSGCSVR KHVERASTDP KAVITTYEGK HNHDIPNGRN SNRSQTNANH  540
LFADVHWLLY TQFVLPVSFR LPLLLDASHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35295526877Probable WRKY transcription factor 4
2lex_A1e-35295526877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195447.10.0PREDICTED: probable WRKY transcription factor 4
TrEMBLA0A438D4W61e-157A0A438D4W6_VITVI; Putative WRKY transcription factor 4
STRINGXP_009768106.11e-151(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-98WRKY DNA-binding protein 3