PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000637.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 358aa    MW: 40524.1 Da    PI: 6.5493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000637.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.28.8e-062443525
                             --SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                             +C+ffa+ G C  G+ C F H
  Itr_sc000637.1_g00009.1 24 PCKFFAQ-GGCLKGEHCEFLH 43
                             8******.************* PP
2zf-CCCH23.59.5e-085272526
                             --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                             +C ++++ G+C +G+rC++ H+
  Itr_sc000637.1_g00009.1 52 ICTYYQK-GICAFGSRCRYEHV 72
                             7******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00132145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-72144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1592446IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-52449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2394774IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-55071IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-55272IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.5E-13145217No hitNo description
Gene3DG3DSA:3.30.40.105.0E-10146213IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001626.72E-5152212No hitNo description
SMARTSM001841.3E-7153210IPR001841Zinc finger, RING-type
PfamPF000974.4E-7153210IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.165153211IPR001841Zinc finger, RING-type
PROSITE patternPS005180177186IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.012240268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77240269IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MILSFIPISR MGIDELSKHT SWVPCKFFAQ GGCLKGEHCE FLHELRTPPN NICTYYQKGI  60
CAFGSRCRYE HVKTSQLQSS ASSFSGHRKP NWNQKLGPQD SLQSDGIAEA KIHNPADQSI  120
CSFAAAGXXX HLKACKKRQW HLEILKHSQE IECSVCLERV LSKPTEAERK FGILSECDHP  180
FCIVCIRNWR SSSPSSGLDV NSALRACPIC RKRSYFVIPS VIWYNTKEEK QEIIDSYKAK  240
LRTIDCKHFD FGNGTCPFGT SCFYKHTVKP GSMMWNRALM PDTFGSRYPD MDEVGPSSDT  300
DVDGLANLFE HLYMPHRPGG LQEQEDSSDE ELYEFAEAMS FLLLLHGSDT SDFSSDEE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150808.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotE0X9N41e-102C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A328DTA60.0A0A328DTA6_9ASTE; Uncharacterized protein
TrEMBLA0A484NHR70.0A0A484NHR7_9ASTE; Uncharacterized protein
STRINGXP_009781754.11e-139(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-101C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]