PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000640.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 202aa    MW: 22226.5 Da    PI: 6.0725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000640.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.8e-0964106754
                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               + r RR+ri ++f  L++l+P        K++ +++Le A++Y++ L
  Itr_sc000640.1_g00015.1  64 VAARERRHRISDRFKILQSLVPGG-----SKMDTVSMLEGAIHYVNFL 106
                              56799*****************95.....5**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57757106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.17E-1363111No hitNo description
SMARTSM003534.9E-1263112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1163114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-1364128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-666106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDISFSPCNS TAHFLESSSS FGLPADYPCK QQKNHGGTMK KKSSSSSSSS SGRAAKLSTD  60
RQSVAARERR HRISDRFKIL QSLVPGGSKM DTVSMLEGAI HYVNFLKAQI RLHETIIDSV  120
SGDHNYYVPN NHNNGDCYFY DDPSGGYSQF LGDATAAIHE DEWLQANAAV APPCPPSQLA  180
FVEGGAPFQA EETMYYDESM YY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A484MYS39e-47A0A484MYS3_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117141723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.13e-25APRATAXIN-like