PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000654.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 203aa    MW: 22547.4 Da    PI: 6.4978
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000654.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.61.1e-4391081100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +Ca+Ck+lrr+CakdC++ap+fp+++p+kfa+vhk+FGasnv+k+l+++p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q
  Itr_sc000654.1_g00013.1   9 PCASCKLLRRRCAKDCIFAPHFPSDDPHKFAIVHKVFGASNVSKMLQEIPADHRADAVSSLVYEANARLRDPVYGCVGAITYLQNQ 94 
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              ++ql+ +la++++e
  Itr_sc000654.1_g00013.1  95 VSQLQMQLAVAQAE 108
                              *********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.4648109IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-439106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAAGASNSPC ASCKLLRRRC AKDCIFAPHF PSDDPHKFAI VHKVFGASNV SKMLQEIPAD  60
HRADAVSSLV YEANARLRDP VYGCVGAITY LQNQVSQLQM QLAVAQAEIL CIQMQQPPPP  120
PQDSSTTVPS PPQIHLRDAA AADLDEDDDE RRLKSLFLHH QQNNHQCFNN FTPSSDNTVI  180
LHQSFKRAPF FEHDDMVSSL TQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-4451107112LOB family transfactor Ramosa2.1
5ly0_B6e-4451107112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191783.11e-104PREDICTED: LOB domain-containing protein 12-like isoform X1
SwissprotQ8LBW33e-69LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0K9QFW03e-77A0A0K9QFW0_SPIOL; Uncharacterized protein
STRINGEMJ197143e-77(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.15e-69LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]