PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000656.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 254aa    MW: 28717.2 Da    PI: 6.0641
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000656.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-1867117656
                              S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +f++eq++ Le++F  + ++ a+++ +LA+ lgL+ rqV +WFqN+Ra++k
  Itr_sc000656.1_g00001.1  67 RFSDEQVKLLESMFTLETKLEAHKKLQLARDLGLQPRQVGIWFQNKRARWK 117
                              69************************************************9 PP
2HD-ZIP_I/II112.33.1e-3666155493
              HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                              +r+s+eqvklLE++F+ e+kLe ++K +lar+Lglqprqv +WFqn+RAR+k+kq+E+dy+ Lk+++d+l+ + + L+ke+++L  
  Itr_sc000656.1_g00001.1  66 KRFSDEQVKLLESMFTLETKLEAHKKLQLARDLGLQPRQVGIWFQNKRARWKAKQIEQDYRELKAKFDTLNLQFDYLKKENHSLLI 151
                              8***********************************************************************************98 PP

              HD-ZIP_I/II  90 elke 93 
                              +l++
  Itr_sc000656.1_g00001.1 152 QLEK 155
                              8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.14E-1750120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-1852119IPR009057Homeodomain-like
SMARTSM003899.8E-1657123IPR001356Homeobox domain
PROSITE profilePS5007115.75859119IPR001356Homeobox domain
CDDcd000862.96E-1367120No hitNo description
PfamPF000461.8E-1567117IPR001356Homeobox domain
PRINTSPR000313.3E-59099IPR000047Helix-turn-helix motif
PRINTSPR000313.3E-599115IPR000047Helix-turn-helix motif
PfamPF021832.2E-11119157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MPTNPTTKAR ATHNINSHFS TILEGKSCSN SKMEGGDDQY PGAPEDEGPV RCQQPSNKKK  60
GTANCKRFSD EQVKLLESMF TLETKLEAHK KLQLARDLGL QPRQVGIWFQ NKRARWKAKQ  120
IEQDYRELKA KFDTLNLQFD YLKKENHSLL IQLEKLRYEV ENRKPQDSKG SKDANFETNW  180
KEKAAAGCLN GGAEDAKEVG INEYLEQQEE EAELLKLQGG LGDCSPLSSQ ENWCCIGLGD  240
AFCHSCGTSE LWDI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195613.11e-115PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A1J6KHK41e-52A0A1J6KHK4_NICAT; Homeobox-leucine zipper protein athb-7
STRINGXP_009798092.11e-52(Nicotiana sylvestris)
STRINGXP_009611805.11e-52(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-34homeobox 7