PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000656.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 340aa MW: 37310.5 Da PI: 6.4305

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000656.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	72.5	5.5e-23	241	299	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYG K++++s+++++YYrC ++ +Cp+kk+v+ s d+++ ++tY+g+Hnh+ Itr_sc000656.1_g00010.1 241 DGWEWRKYGTKMMNDSPHSKGYYRCNHEekKCPAKKHVQLSYMDESTYIVTYKGNHNHP 299 9************************9999*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-24	230	301	IPR003657	WRKY domain
SuperFamily	SSF118290	1.09E-21	238	301	IPR003657	WRKY domain
SMART	SM00774	1.6E-24	239	300	IPR003657	WRKY domain
Pfam	PF03106	2.7E-20	241	299	IPR003657	WRKY domain
PROSITE profile	PS50811	23.732	241	301	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MDGEKNDWDL GAVVRGCKNL NGNSSSQDVH EHFNGGFASQ TYASIPLLPQ PSHYYSSVSP 60 SIGTERRYFG LEEVIDRFTN GKARELALDP QATINPPTSL DKVDGTGGMG KDTPAPQSPD 120 PYFGLEEVID RFTGGKMREP ILDLKATITR PTSLDKAGGS GLGGIGKDTL APQSLNPSPT 180 LEPQQSLPSS QTSSPEKDGG LEDENLPHQV EEVNEVEMSV VKVKVPVEKV QVPAEKVDEW 240 DGWEWRKYGT KMMNDSPHSK GYYRCNHEEK KCPAKKHVQL SYMDESTYIV TYKGNHNHPP 300 PVQTTTSKRK KRSWARARPP VPPSSKGEGS FSTPSTNTAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-11	241	301	16	74	WRKY transcription factor 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019195569.1	2e-75	PREDICTED: probable WRKY transcription factor 69

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11091	13	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.2	3e-15	WRKY DNA-binding protein 69