PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000656.1_g00012.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 274aa MW: 29465.8 Da PI: 8.784

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000656.1_g00012.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	28	89	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rkn++sss Itr_sc000656.1_g00012.1 28 KEKALNCPRCSSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNRRSSS 89 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.1E-33	30	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.031	32	86	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-25	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MDSSQWPQGI GVVKGGVVEA PKKPRPEKEK ALNCPRCSST NTKFCYYNNY SLSQPRYFCK 60 TCRRYWTEGG SLRNVPVGGG SRKNRRSSSS ISSSSSLASS SSSSKKLPDL AVTPPSFPSH 120 QQNPKGHDLN LAYPPPQINN FGGAGGISEI LNLNPNSTAA MEILKNGFSS FMGMPPPPVH 180 PDHHHHHSNA AMFLSPGVPL SLDGFCNGYG NLPPQPQPAG TARMFFPNLE DLKPVSTMAT 240 DNHQFEEQNR GEGENDGNGY WNGMLGGGGG GTSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019195620.1	1e-126	PREDICTED: dof zinc finger protein DOF1.8-like
Swissprot	Q8LAP8	9e-40	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A068PXR9	2e-70	A0A068PXR9_TOBAC; Dof zinc finger protein
TrEMBL	A0A1U7YPX6	2e-70	A0A1U7YPX6_NICSY; dof zinc finger protein DOF1.8-like
STRING	XP_009801284.1	3e-71	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	6e-34	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]