PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000661.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 245aa MW: 25866.6 Da PI: 7.8788

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000661.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.7	3.6e-42	48	147	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r+da++slvyeA++r+rdPvyG++g i++lqqq Itr_sc000661.1_g00006.1 48 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPESQRSDAANSLVYEANVRLRDPVYGCMGAISALQQQ 133 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 ++ l+ael+++++e Itr_sc000661.1_g00006.1 134 IQFLQAELNAVRAE 147 ********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.341	47	148	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.5E-42	48	145	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MERVDEIIGR KLKTEMEAAS AAASLSSPEM VMAGRRQVLG TTLNTITPCA ACKLLRRRCA 60 EECPFSPYFS PHEPHKFAAV HKVFGASNVS KMLMEVPESQ RSDAANSLVY EANVRLRDPV 120 YGCMGAISAL QQQIQFLQAE LNAVRAELLR HKYREAAAAA AAANSIITSA PALAAGAVSV 180 VELPQAPPTP TPPPPPPPPS VLVVSSSSSS SSTSPPSSAP SSLYTPASTV ASFGTIQTIN 240 MPFFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-45	41	151	4	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-45	41	151	4	114	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019162860.1	1e-110	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q9AT61	5e-76	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A4D8YJA1	7e-93	A0A4D8YJA1_SALSN; Uncharacterized protein
STRING	Migut.N00746.1.p	1e-89	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	4e-75	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]