PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000667.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 240aa MW: 26763.6 Da PI: 6.3705

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000667.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.3e-10	84	130	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd iN++f eL ++l + + +K +K++iL Av+ + sL Itr_sc000667.1_g00004.1 84 KACREKMRRDLINERFLELSSILEPT---RPPKTDKIAILSGAVHVVTSL 130 678********************9...99***********998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.808	79	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.52E-8	82	135	No hit	No description
Pfam	PF00010	5.2E-8	83	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-12	84	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-12	84	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.0E-9	85	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
METDDSNWLI DYEMMDDISS AVSATASFPS SATIDFSWVS QTANYSSTAT GSAAGQFEET 60 EVCKEARSRK RLKLEACIPS GSNKACREKM RRDLINERFL ELSSILEPTR PPKTDKIAIL 120 SGAVHVVTSL RTEIQKLKES NLEMVEKIHE LKAEKMELRD EKQKLKEDKR KLEQQVNAAA 180 MFAKPAAASF SHPILNLEGQ VAAGKKMMPV VGYPGFAMWQ FMQPTIVDTS QDHVLHPPVA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192948.1	1e-162	PREDICTED: transcription factor bHLH115-like
Refseq	XP_019192949.1	1e-162	PREDICTED: transcription factor bHLH115-like
TrEMBL	A0A0V0HKS2	4e-93	A0A0V0HKS2_SOLCH; Putative transcription factor ILR3-like
STRING	Solyc07g052670.2.1	6e-93	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA950	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	2e-65	bHLH family protein