PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000667.1_g00011.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 445aa MW: 48384.1 Da PI: 7.5418

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000667.1_g00011.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.3	5.5e-07	45	75	3	33
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedCllee 33 +C++++++++ C d++ ++C+ C + Itr_sc000667.1_g00011.1 45 SLICDKCNSQPAMVRCMDDDICICQACDWGG 75 579************************8665 PP
2	CCT	61.8	2.1e-21	389	432	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY eK+ktR FeK+irY+sRKa+A++R RvKGrFvk+ Itr_sc000667.1_g00011.1 389 RDKAKMRYHEKKKTRTFEKQIRYASRKARADTRRRVKGRFVKAG 432 899**************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.8E-8	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.774	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.12E-4	3	47	No hit	No description
CDD	cd00021	5.45E-4	47	86	No hit	No description
PROSITE profile	PS51017	14.684	389	431	IPR010402	CCT domain
Pfam	PF06203	2.4E-16	389	431	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MEPLCEFCGV VRAVVYCKAD SAKLCLHCDG CVHSANGLSR RHQRSLICDK CNSQPAMVRC 60 MDDDICICQA CDWGGNGCSG QAHRRKMLSA YTGCPSPADF TRMWSSVLEV PVENNNNNNV 120 PPRRFDNNNA SSSSMCVMNN NNNENNGNSN LAPSSVDLNK GNGDQQGFSA GLVASRLNEL 180 ASCLKFDPCR INPSLMIPPT PFERDHAGES SLLNNNNKGC GNAKNNLELP EGDGICQGVD 240 AAGDVSLNLN DYEMFNGLQQ GQPRYNVNGE DVGMGCLTTM EKNSGTESSS RVTSSSGRQE 300 CIGLEWLPIG SSINLAPPMN CMLMNPPPST CNKSNNGLGL RTGQQQAAHS LSNITTGDSS 360 VADYQDCGLS PALLNRGGDF EVSCSPQARD KAKMRYHEKK KTRTFEKQIR YASRKARADT 420 RRRVKGRFVK AGEEYDYDPL ITKKA

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MEPLCEFCGV VRAVVYCKAD SAKLCLHCDG CVHSANGLSR RHQRSLICDK CNSQPAMVRC  60
MDDDICICQA CDWGGNGCSG QAHRRKMLSA YTGCPSPADF TRMWSSVLEV PVENNNNNNV  120
PPRRFDNNNA SSSSMCVMNN NNNENNGNSN LAPSSVDLNK GNGDQQGFSA GLVASRLNEL  180
ASCLKFDPCR INPSLMIPPT PFERDHAGES SLLNNNNKGC GNAKNNLELP EGDGICQGVD  240
AAGDVSLNLN DYEMFNGLQQ GQPRYNVNGE DVGMGCLTTM EKNSGTESSS RVTSSSGRQE  300
CIGLEWLPIG SSINLAPPMN CMLMNPPPST CNKSNNGLGL RTGQQQAAHS LSNITTGDSS  360
VADYQDCGLS PALLNRGGDF EVSCSPQARD KAKMRYHEKK KTRTFEKQIR YASRKARADT  420
RRRVKGRFVK AGEEYDYDPL ITKKA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019193141.1	0.0	PREDICTED: putative zinc finger protein CONSTANS-LIKE 11
TrEMBL	A0A067K0T7	1e-125	A0A067K0T7_JATCU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4231	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	2e-40	B-box type zinc finger protein with CCT domain