PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000671.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 206aa    MW: 22533.4 Da    PI: 5.2316
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000671.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.21.2e-42351341100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q
  Itr_sc000671.1_g00001.1  35 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGAIDQLQKQ 120
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              ++ l+a+la++++e
  Itr_sc000671.1_g00001.1 121 VNMLQAQLAKAQAE 134
                              *********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.20934135IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-4235132IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MESSDTTNSP PSSRSVSPSS SPASPTTPLP VVMSPCAACK ILRRRCAEKC VLAPYFPPND  60
PIKFTTAHRV FGASNIIKFL QELPESQRAD AVSSMVYEAN ARLRDPVYGC AGAIDQLQKQ  120
VNMLQAQLAK AQAEVFNMQC QHANIMALYC EMARSSSPQA SPPQQFSFDD FSGRNGLRGG  180
GYCDYIDEDN SLDSFWDQLN TLGMSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-44231401116LOB family transfactor Ramosa2.1
5ly0_B4e-44231401116LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194859.11e-122PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR01e-66LBD1_ARATH; LOB domain-containing protein 1
TrEMBLM1CDT53e-82M1CDT5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000653464e-83(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-68LOB domain-containing protein 1