PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000680.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 436aa    MW: 48775.2 Da    PI: 4.8382
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000680.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99e-1774134155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpse..ng...kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr++  +g+WvAeIr+p++  +    kr  +rf+lg+f ta e a a++ a++ ++g
  Itr_sc000680.1_g00020.1  74 CSYRGVRQRT-WGKWVAEIREPVSatDEcdsKRhrRRFWLGTFSTAVEGALAYDMAARVMYG 134
                              67*****999.**********77767335884457**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.63E-2674144No hitNo description
PfamPF008472.0E-1174134IPR001471AP2/ERF domain
SMARTSM003803.5E-2975148IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1775143IPR016177DNA-binding domain
PROSITE profilePS5103221.64175142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-2775143IPR001471AP2/ERF domain
PRINTSPR003672.9E-117687IPR001471AP2/ERF domain
PRINTSPR003672.9E-11124144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAYSGSCKTR KRRNGSESVE EMLLRWKALN NEAETSNSSA TAPDGARKKK RKFQAKGSRK  60
GCMRGKGGPE NSGCSYRGVR QRTWGKWVAE IREPVSATDE CDSKRHRRRF WLGTFSTAVE  120
GALAYDMAAR VMYGPKAILN FPDAFLQNAS GGGLRLNYEG ESSAASVKND VPKVKVVGSQ  180
LKLSDGNGEG ETSAEVLDLI SVSKPMEEPY ILERHDSCSP ICYIEESESR IVPMTTSDFM  240
DVSKAQESNV LRRNDSSSPI CSTGESRVVP IVKELEDLVQ PELPAYSYVK KVEDSKLFNG  300
SNEANISCNV DAGMQNIETK VDAEERRLDF NCSEYERSDD KMFSQDENRG SDERKPELQS  360
QLDYFLKILL EDNHSTENMN ISETFSLMEN HEGSDFFKNL LKESFSKDPI LELNTDDTEV  420
KQDGKDEPSN HSTLVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1676142360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14553ARKKKRKFQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019187393.10.0PREDICTED: dehydration-responsive element-binding protein 2B-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-36ERF family protein