PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000684.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 240aa    MW: 27278.8 Da    PI: 4.672
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000684.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438e-145092754
                             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                               Er+RR+++N++++ Lr ++P+ +      K++Ka+i++ A++YI++L
  Itr_sc000684.1_g00003.1 50 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIVKDAIDYIQEL 92
                             57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6344392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-1744109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-124697No hitNo description
Gene3DG3DSA:4.10.280.101.7E-1749111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-154998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-115092IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MENVGENIWD ASILFQSEDL DSYLDEAIFS YYDSSSPDGE QSPAASKNIV SERNRRKKLN  60
ERLFALRAVV PNISKMDKAS IVKDAIDYIQ ELHEQERRIK SEISELESER SKRNIMLDQF  120
DQEGISFNSK PKRTRIDEQC HDSPGSRSPV NVLELRVSSM GEKTLVVSLT CSKRTDTMVK  180
LCEIFESLNI KIISATITAF SGRLLKTVFI EAEEEEKDFL KIRIESAIAT LNDPDSPMST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1448110964Transcription factor MYC2
5gnj_B2e-1448110964Transcription factor MYC2
5gnj_E2e-1448110964Transcription factor MYC2
5gnj_F2e-1448110964Transcription factor MYC2
5gnj_G2e-1448110964Transcription factor MYC2
5gnj_I2e-1448110964Transcription factor MYC2
5gnj_M2e-1448110964Transcription factor MYC2
5gnj_N2e-1448110964Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182079.11e-155PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV98e-79BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3YB161e-122A0A1S3YB16_TOBAC; transcription factor bHLH35-like isoform X2
TrEMBLA0A1U7V7321e-122A0A1U7V732_NICSY; transcription factor bHLH35-like isoform X2
STRINGXP_009760780.11e-121(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-82bHLH family protein