PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000690.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GeBP

Protein Properties

Length: 225aa MW: 25142.6 Da PI: 7.7477

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000690.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	36	2e-11	32	110	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 l+++++s+eDei lL++l++ +++ v+ + +vs++q+ Ki+r+K++++k k + +++++hd++ Itr_sc000690.1_g00002.1 32 LSNKVFSKEDEINLLKALLESTTDPT-------------VSLPLGRHVSETQIAAKIKRMKERYHKLAKS-----KSRIKTAHDEE 99 5789*************9855544.............66788999***************9999.....7799*** PP DUF573 88 ifelskkiWgs 98 ++++++ iWg+ Itr_sc000690.1_g00002.1 100 VYQIARLIWGK 110 *******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.1E-9	34	109	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MSTSKRRSAS KRKTSAGATS DPKSPAAANS QLSNKVFSKE DEINLLKALL ESTTDPTVSL 60 PLGRHVSETQ IAAKIKRMKE RYHKLAKSKS RIKTAHDEEV YQIARLIWGK QAKKPAPLMV 120 KISETTAEET SPEIEKLPDG EDLGENAEKE NGDATGEVDL GDFPYLVEQM AVNFTGNDMY 180 LMGLRQLGSR KLEGMNEQWK GLMEEEAEFI AKKAQFYQEL MAFKN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB263748	0.0	AB263748.2 Ipomoea trifida DNA, self-incompatibility (S-) locus region, haplotype:S1.
GenBank	AH013750	0.0	AH013750.2 Ipomoea trifida haplotype S1 putative disease resistance protein gene, partial cds; hypothetical protein, putative zinc finger protein, putative tnp2 transposase, putative transposase En/Spm, putative 50S ribosomal protein L9, hypothetical protein, putative CDK regulatory subunit, putative copia-like polyprotein, putative PHD zinc finger protein, putative glycosyltransferase, hypothetical protein, putative RelA/SpoT protein, hypothetical protein, putative defensin protein, hypothetical protein, putative phosphatidylcholine-sterol acyltransferase, putative dihydroflavonol reductase, putative non-phototropic hypocotyl 3-like protein, putative adapitin protein, putative DNA repair protein, putative serine/arginine (SR) protein kinase protein, putative vacuolar assembling protein, hypothetical protein, putative serine carboxipeptidase, hypothetical protein, putative endonuclease III protein, hypothetical protein, prephenate dehydratase, putative pentatricopeptide repeat-containing protein, putative tRNA isopentenylpyrophosphatase, hypothetical protein, putative histone deacetylase, and putative neutral invertase genes, complete cds; and putative protein kinase gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199092.1	1e-126	PREDICTED: serine/arginine repetitive matrix protein 1-like
TrEMBL	Q6JJ58	1e-157	Q6JJ58_IPOTF; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13634	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	1e-08	DNA-binding storekeeper protein-related transcriptional regulator