PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000691.1_g00017.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 198aa MW: 22458.6 Da PI: 9.8032

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000691.1_g00017.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.4	4.8e-13	57	129	2	77
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwe 77 fY eYA ++GF +r+ +s+ks+r+g+i++r + C g ++++k + + +r r gC a++ +k+ek g+w+ Itr_sc000691.1_g00017.1 57 FYVEYAGRAGFITRVLSSRKSERDGSIISRGLGCR--GIPDTQKIG-NAATVKRDRRREGCAAMILIKREKPGTWV 129 9*******************************7..555555555.5688899999************99995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-10	57	129	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MRRFVLFLLL DVQIAVDDSI ERVEFSAGGE VSPSETNRIR EPNEGMTFDS EAAARAFYVE 60 YAGRAGFITR VLSSRKSERD GSIISRGLGC RGIPDTQKIG NAATVKRDRR REGCAAMILI 120 KREKPGTWVD EKDKKIQELT AELRVKKRLS AAYREHLLGI MKDVESHSEH LSSKVQAIRE 180 NLRSLDAERQ ELLTRERP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167546.1	1e-123	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S4AQE7	7e-89	A0A1S4AQE7_TOBAC; protein FAR1-RELATED SEQUENCE 2-like
STRING	XP_009605654.1	9e-90	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13099	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-39	FAR1 family protein