PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000692.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 222aa    MW: 25266.1 Da    PI: 6.8941
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000692.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-171472148
                             TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd+ll ++++++G g            +W++Ia +++ gRt++++k++w+++l
  Itr_sc000692.1_g00008.1 14 KGAWSEEEDDLLRKCIQKFGEGkwhlvpfraglnRWSLIAGRIP-GRTANDVKNYWHSHL 72
                             79******************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.224976IPR017930Myb domain
SuperFamilySSF466891.05E-13982IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-20976IPR009057Homeodomain-like
SMARTSM007171.5E-151374IPR001005SANT/Myb domain
PfamPF002492.9E-151472IPR001005SANT/Myb domain
CDDcd001673.38E-131672No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MVNSSARSSP RVRKGAWSEE EDDLLRKCIQ KFGEGKWHLV PFRAGLNRWS LIAGRIPGRT  60
ANDVKNYWHS HLKKKVVGMH MTTSSNSSRQ DNNWDDEKSK APQITENTLF RPRPRRFFRT  120
SPAFSTLTGK ANAPLPPHQF QASQSEATPP PDLLMLNNVQ QTNNSIATNL PSETTSVQWW  180
EDLLYDDNEH QGTTDMHQGI IDWTDDGFPI DVDLLTLLDP TN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9868950.0AY986895.1 Ipomoea trifida isolate GRIF6200-1 anthocyanin gene transcription factor (myb1) gene, partial cds.
GenBankAY9868960.0AY986896.1 Ipomoea trifida isolate GRIF6200-2 anthocyanin gene transcription factor (myb1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173384.15e-97PREDICTED: transcription factor MYB90-like
RefseqXP_019184336.15e-97PREDICTED: transcription factor MYB90-like
TrEMBLQ1JV101e-95Q1JV10_IPONI; R2R3-MYB transcriptional regulator
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.11e-27myb domain protein 114