PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000695.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 120aa    MW: 13025.6 Da    PI: 5.0802
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000695.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.0006220851554
                             HHHHHHHHHHCTSCCC.............................TTS-STCHHHHHHHHHHHHHH CS
                      HLH 15 riNsafeeLrellPkas..........................kapskKlsKaeiLekAveYIksL 54
                             +iN   ++L+ llP ++                            +   +  +ei+e++++YIk L
  Itr_sc000695.1_g00005.1 20 EINALVNKLQALLPASTsssytnkgqssagdnlgsillpqltiPFGPVPVAASEIVEETCNYIKRL 85
                             57777788888888854478888888888888888888877764444557779***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.8E-41989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MSSRRRSSSS TSASSFTQEE INALVNKLQA LLPASTSSSY TNKGQSSAGD NLGSILLPQL  60
TIPFGPVPVA ASEIVEETCN YIKRLHREVD GLCERLSQIL SSNDTTNLDL ETLIRNLLQQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198096.11e-39PREDICTED: transcription factor ILI4-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.12e-15activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1