PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000697.1_g00019.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 136aa    MW: 15105.8 Da    PI: 8.884
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000697.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-202172256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr+++ +g+++AeIrdp+ +g  +r +lg+++++e+Aa+a+++a+ kl+g+
  Itr_sc000697.1_g00019.1 21 KYRGVRRRP-WGKYAAEIRDPTRQG--ARQWLGTYDSPEDAARAYDRAAFKLRGH 72
                             8********.**********96544..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.3812179IPR001471AP2/ERF domain
PfamPF008474.6E-142172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-302181IPR001471AP2/ERF domain
CDDcd000182.69E-192180No hitNo description
SuperFamilySSF541715.95E-242180IPR016177DNA-binding domain
SMARTSM003801.4E-362185IPR001471AP2/ERF domain
PRINTSPR003674.7E-132233IPR001471AP2/ERF domain
PRINTSPR003674.7E-136181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEGSSSKGKA IQVGKGKEEV KYRGVRRRPW GKYAAEIRDP TRQGARQWLG TYDSPEDAAR  60
AYDRAAFKLR GHLAILNFPN EYYSQLPNPP CYYPSLTRPG GGSDKGGGGS PTGKSKEVFE  120
IEYEDGLMER LLEGDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-281482775Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191293.12e-74PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S3XM452e-52A0A1S3XM45_TOBAC; ethylene-responsive transcription factor ERF098-like
STRINGXP_009790228.11e-51(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-37ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]