PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000703.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 323aa    MW: 36526.3 Da    PI: 6.3224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000703.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17127177256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++  grWvAeIr p +   r+r +lg+f++ae+Aa a+++ + +l+g+
  Itr_sc000703.1_g00014.1 127 LYRGVRQRH-LGRWVAEIRLPQN---RARLWLGTFDSAEDAALAYDREAYRLRGA 177
                              59******9.8*********954...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.85E-31126186No hitNo description
SMARTSM003802.4E-33127190IPR001471AP2/ERF domain
PROSITE profilePS5103221.522127184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-29127185IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-20127185IPR016177DNA-binding domain
PRINTSPR003674.0E-8128139IPR001471AP2/ERF domain
PfamPF008471.5E-10128176IPR001471AP2/ERF domain
PRINTSPR003674.0E-8150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNPTAEGGRI LVEEQHHDLS DNHRPLKKMK NIPHDEHQSI PSSSSTSHHT HKPLISPPQP  60
PRFRFPFALH HTIPQPLFHH QSMISFAPQQ HLLSSGCVND QISWQRAGQI GLGHDGLDET  120
ASPLPKLYRG VRQRHLGRWV AEIRLPQNRA RLWLGTFDSA EDAALAYDRE AYRLRGAKAR  180
LNFPHLFLGN DHALQEHLET ATQEEAKPKQ RTSGNIIESN NDVADHVEDR KCSGISTHEQ  240
PKTIDDDYVN HDQSVEPEWA GDGLQSDWLP GNNINTFWDH NISTTTDTFL QQSDFAISSF  300
PDGNLPHLST TEAGILQQEP YLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-21126184160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-21126184463ATERF1
3gcc_A8e-21126184463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153855.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13-like
TrEMBLM1B8H78e-43M1B8H7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000395761e-43(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.19e-32ERF family protein