PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000712.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 122aa    MW: 14087.2 Da    PI: 6.5093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000712.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.5e-0729681255
                             HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                             RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Itr_sc000712.1_g00015.1 29 RREKISERMKLLQELVPGC----NKIAGKAVMLDEIIKYVQSLQ 68
                             9******************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.6521767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-42073IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-122884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-42968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-132981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-62972No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MKHKTGQNDD NPRWKSSVEP QKENYVHVRR EKISERMKLL QELVPGCNKI AGKAVMLDEI  60
IKYVQSLQQQ VEFLSMKLAA ENPEMNLDVE QILANDAQPH CMLYLSDRFP EPVTDHCPAR  120
LA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156067.13e-40PREDICTED: transcription factor bHLH74-like isoform X3
SwissprotQ6NKN91e-35BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A087HMF55e-35A0A087HMF5_ARAAL; Uncharacterized protein
TrEMBLA0A484NDS62e-35A0A484NDS6_9ASTE; Uncharacterized protein
STRINGA0A087HMF58e-36(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52502435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.15e-38bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]