PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000712.1_g00024.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 159aa    MW: 18944.5 Da    PI: 10.206
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000712.1_g00024.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.76.7e-1549107462
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                               kr+rrk++NRe+ArrsR RKk+  e+L+ ++  L+ eN++Lk++l   +  +++l+ e
  Itr_sc000712.1_g00024.1  49 EKRQRRKISNRESARRSRWRKKMHSEKLQAEASHLKVENRKLKNRLYLVTHRYEALQRE 107
                              69**************************************************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-1246110IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.65648111IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-1048105No hitNo description
PfamPF001707.0E-1249107IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.06E-1050104No hitNo description
CDDcd147021.35E-1351101No hitNo description
PROSITE patternPS0003605368IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MMCEEFIQHE LPVFTPCEMR QLFSPFEPNL HVHSTSTSET APSVYSLEEK RQRRKISNRE  60
SARRSRWRKK MHSEKLQAEA SHLKVENRKL KNRLYLVTHR YEALQRETNR LLTMSILLQQ  120
RLTDLSQIWT PMQLHNNSSN STYYSSSYHL QHNNSLNAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16790RKKMHSEKLQAEASHLKVENRKLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065855.13e-38basic leucine zipper 4-like
TrEMBLA0A2G2ZRB51e-37A0A2G2ZRB5_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000125751e-33(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28202251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.16e-16basic leucine-zipper 5