PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000717.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

YABBY

Protein Properties

Length: 197aa MW: 21921.8 Da PI: 8.5807

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000717.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	213.1	9.1e-66	7	170	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 ++eq+Cy+ CnfCn +lavsvP +sl+++vtvrCGhCt+l svn+a a + + +s + ++++ + n++s + + Itr_sc000717.1_g00004.1 7 AAAPEQLCYIPCNFCNIVLAVSVPCSSLYEIVTVRCGHCTNLWSVNMAAAFHHHSLSSS--SPPSSPW-QDHHAQVPNYTSSEYMG 89 5689*****************************************998877666554..2223333.33334444444433333 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +s++ ++++ ++ + + v+rPPekr rvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Itr_sc000717.1_g00004.1 90 NGSSSKFNHKMPTRPPITTSIEERIVNRPPEKRARVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 170 33333333322223333333334569***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-68	9	170	IPR006780	YABBY protein
SuperFamily	SSF47095	4.58E-8	106	163	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.0E-4	119	164	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MSTCNAAAAP EQLCYIPCNF CNIVLAVSVP CSSLYEIVTV RCGHCTNLWS VNMAAAFHHH 60 SLSSSSPPSS PWQDHHAQVP NYTSSEYMGN GSSSKFNHKM PTRPPITTSI EERIVNRPPE 120 KRARVPSAYN QFIKEEIQRI KANNPDISHR EAFSTAAKNW AHFPHIHFGL MLDSNNNQPK 180 LGVSEGTGKR LCKGLQY

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667744	9e-64	KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.
GenBank	KJ667746	9e-64	KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019189497.1	1e-133	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	2e-80	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A068FJR2	8e-91	A0A068FJR2_9SOLN; YAB5 protein
STRING	XP_009785258.1	3e-89	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-81	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]