PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000727.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 311aa MW: 34956.8 Da PI: 6.3156

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000727.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.7	1.9e-52	13	162	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........................kvkaeekewyfF 61 lppGfrFhPtdeel+++yL++kv ++++++ +i+evd+++vePwdLp k+k +ekewyfF Itr_sc000727.1_g00013.1 13 LPPGFRFHPTDEELITHYLTPKVLDTRFSA-AAIAEVDLNSVEPWDLPFepgfllsllarfdsiyvvvvvedegKAKMGEKEWYFF 97 79************************99.78***********5599************9999987788999* PP NAM 62 skrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + rd+ky+tg r+nrat +gyWkatgkdke+++ ++lvg+kktLvfykgrap+ge+t+Wvmhey Itr_sc000727.1_g00013.1 98 CVRDRKYPTGMRTNRATGAGYWKATGKDKEIFK-AKTLVGMKKTLVFYKGRAPRGENTSWVMHEYY 162 *****************************.999*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-55	9	186	IPR003441	NAC domain
PROSITE profile	PS51005	54.831	13	186	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	14	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MSGFSGSDND MDLPPGFRFH PTDEELITHY LTPKVLDTRF SAAAIAEVDL NSVEPWDLPF 60 EPGFLLSLLA RFDSIYVVVV VEDEGKAKMG EKEWYFFCVR DRKYPTGMRT NRATGAGYWK 120 ATGKDKEIFK AKTLVGMKKT LVFYKGRAPR GENTSWVMHE YYRLEGMHNL PKSAKNEWVI 180 CRVFKKSSGG KKVTISGLMR GENGVENSKM MPPLMDISQA SHVPCFSNSV EDQKPRNGES 240 SGTLSNHQIM PELDVDSGVM MMQDHSILKL LVGNNQNSEL GGLRPCDDDQ QFLITSAAGA 300 VDLDCLWNYH Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-51	9	192	13	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-51	9	192	13	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-51	9	192	13	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-51	9	192	13	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-51	9	192	16	174	NAC domain-containing protein 19
3swm_B	5e-51	9	192	16	174	NAC domain-containing protein 19
3swm_C	5e-51	9	192	16	174	NAC domain-containing protein 19
3swm_D	5e-51	9	192	16	174	NAC domain-containing protein 19
3swp_A	5e-51	9	192	16	174	NAC domain-containing protein 19
3swp_B	5e-51	9	192	16	174	NAC domain-containing protein 19
3swp_C	5e-51	9	192	16	174	NAC domain-containing protein 19
3swp_D	5e-51	9	192	16	174	NAC domain-containing protein 19
4dul_A	4e-51	9	192	13	171	NAC domain-containing protein 19
4dul_B	4e-51	9	192	13	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157006.1	1e-174	PREDICTED: NAC domain-containing protein 92-like isoform X1
Swissprot	Q9FLJ2	1e-102	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1J6KUF8	1e-119	A0A1J6KUF8_NICAT; Nac domain-containing protein 100
STRING	XP_009768516.1	1e-119	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-105	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]